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Free Applied Biosystems Software

Download these free tools to facilitate your experimental design, data analysis, and data management. For more information, click the names of the software listed below. To find updates and patches for software for specific Applied Biosystems instruments, go to
Software Downloads.
ApplicationSoftwareDescriptionInstrument CompatibilityDownload
DNA Methylation AnalysisMethyl Primer Express® Software v1.0Design methylation-specific primers (MSP) and bisulfite sequencing primers (BSP).Genetic AnalyzersDownload
qPCR Protein expression analysisProteinAssist™ Software (pre-release 1)Import Ct files exported from real-time systems to view and analyze protein expression assay data for relative quantitation.Real-time PCR SystemsDownload
DNA Sequencing Sequence Scanner Software v1.0View, edit, print and export sequence data generated using the Applied Biosystems Genetic Analyzers.Genetic AnalyzersDownload
Fragment AnalysisPeak Scanner™ Software v1.0The free Peak Scanner™ Software performs DNA fragment analysis, which separates a mixture of DNA fragments according to their sizes, provides a profile of the separation, and precisely calculates the sizes of the fragments. The software allows you to view, edit, analyze, print, and export fragment analysis data generated using the Applied Biosystems Genetic Analyzers.3100 Genetic Analyzer
3100-Avant™ Genetic Analyzer
3130 and 3130xl Genetic Analyzer
730 and 3730xl DNA Analyzer
SNP GenotypingSNPbrowser™ Software v4.0Select optimal sets of SNPs for association and fine mapping studies by visualizing SNPs in their genomic context using linkage disequilibrium maps and putative haplotype blocks.Genetic Analyzers, Real-Time PCR InstrumentsDownload
SNP GenotypingMouse SNPbrowser™ SoftwareEnables efficient and easy selection of mouse SNP sets to discriminate between strains of interest, with specific applications in genotype/phenotype mapping and strain variation.Genetic Analyzers, Real-Time PCR InstrumentsDownload
SNP GenotypingTaqMan® Genotyper SoftwareProvides a state-of-the-art genotype calling algorithm, intuitive user interface, enhanced Study-based analysis features, and high call rates and accuracy.Applied Biosystems Real-Time PCR Systems (excluding 7300 System), and OpenArray® Genotyping Instrument.Download
The Applied Biosystems resources provided here are all unsupported software development tools. They are not validated products and are provided "as is" and without warranty. Without limiting the foregoing, your use of such resources is subject to any applicable license or terms of use. Comments regarding this site and Applied Biosystems resources provided herein should be submitted to software.community@appliedbiosystems.com. Please do not call Applied Biosystems Customer/Technical Support.

Links to third-party Web sites and any resources or products that they may provide are intended for convenience only and do not imply endorsement or approval by Applied Biosystems and we neither support nor make any warranty for such resources. Applied Biosystems is not responsible for their contents. All queries and end-user support requests regarding third-party resources and products should be addressed to the relevant third party. Applied Biosystems is not responsible for providing any end-user support.

The use of all the resources provided herein and any associated materials is at user's own risk, without recourse to Applied Biosystems. Your use of any resources provided herein, including the software tools, is conditioned on your acceptance of the above terms, including the applicable license terms, if any, and your use of any of the resources herein indicate your understanding and acceptance of these terms.