The Web sites listed below contain scientific information and tools to help
your experimental design, data analysis, and more. For more information, click
the names of the Web sites listed below.
| Web Resource |
Description |
| Bioinformatics.org |
Online databases (e.g., EST Clusters, Immigrant Genes, Leukemia Genes, p53 Tumor Protein Genes) and analysis tools (e.g., COMBOSA3D: Molecule Coloring, JaMBW: Workbench, PeCoP: Conserved Positions, PrimerX: Mutagenic Primers, and more).
|
| Computational Molecular Biology at NIH |
This Computational Molecular Biology site at NIH lists software tools, databases and other resources used at NIH. |
CytoScape
|
An open-source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. |
E-Cell Project
|
An international research project that develops technologies and theoretical supports for computational biology for modeling and reconstructing biological phenomena in silico. The project's goal is to enable precise whole cell simulations at the molecular level.
|
European Molecular Biology Open Software Suite (EMBOSS)
|
A free open-source software package for molecular biologists that
integrates a range of currently available tools for sequence
analysis into a seamless whole. |
| IUBio Software Section |
Indiana University Genome Informatics Lab Web page with software for molecular biology, organized by categories (alignment, evolution, etc.) and by computer system (Apple OS, Windows OS, Unix, Java). |
| National Center for Biotechnology Information (NCBI) |
NCBI creates public databases, conducts research in computational biology, develops software tools for analyzing genome data, and disseminates biomedical information. |
| Regulatory Sequence Analysis Tools |
Modular computer programs specifically designed for the detection of regulatory signals in non-coding sequences |
Search Launcher
|
This Baylor College of Medicine site enables you to seach multiple Web-based molecular biology analysis services via a single user interface.
|
| Software Tools at The Institute for Genomic Research (TIGR) |
List of free, downloadable open-source sofware for microarray analysis, sequencing, alignment, gene finding, and more. |
Systems Biology Organization
|
Information and tools for understanding systems biology, including links to biological databases, research groups, and conferences; software tools; protocols of biological experiments; and publications. |
Systems Biology Markup Language Organization (SBML) |
A computer-readable format for representing models of biochemical reaction networks for metabolic networks, cell-signaling pathways, regulatory networks, and many other applications. |
| Toolbox at the
European Bioinformatics Institute
(EBI) |
Blast, Fasta, sequence analysis, homology searches, sequence translation, protein functional analysis and many other bioinformatics tools. |
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